Ren MX, Cafasso D, Cozzolino S, Pinheiro F. 2017. Extensive genetic differentiation at a small geographical scale: reduced seed dispersal in a narrow endemic marsh orchid, Anacamptis robusta. Botanical Journal of the Linnean Society 183: 429-438.
Leal BSS, Palma da Silva C, Pinheiro F. 2016. Phylogeographic Studies Depict the Role of Space and Time Scales of Plant Speciation in a Highly Diverse Neotropical Region. Critical Reviews in Plant Sciences 35: 215-230.
Pinheiro F, Gouveia TMZM, Cozzolino S, Cafasso D, Cardoso-Gustavson P, Suzuki RM, Palma-Silva C (2016) Strong but permeable barriers to gene exchange between sister species of Epidendrum. American Journal of Botany 103: 1472–1482.
Gouveia TMZM, Pinheiro F (2015) Reciprocal crosses as a tool to evaluate the reproductive isolation in a Orchidaceae hybrid zone. Revista da Biologia 14: 17-23.
Pinheiro F, Cafasso D, Cozzolino S, Scopece G (2015) Transitions between self-compatibility and self-incompatibility and the evolution of reproductive isolation in the large and diverse tropical genus Dendrobium (Orchidaceae). Annals of Botany 116: 457-467.
Pretti VQ, Françoso E, Sforça DA, Pinheiro F, Meyer D, Lohmann LG (2014) Development and characterization of microsatellite loci for Tabebuia cassinoides (Bignoniaceae). Genetics and Molecular Research 13: 5601-5605.
Pinheiro F & Cozzolino S (2013) Epidendrum (Orchidaceae) as a model system for ecological and evolutionary studies in the Neotropics. Taxon, 62, 77-88.
Novello M, Rodrigues JF, Pinheiro F, Oliveira GCX, Veasey EA & Koehler S. 2013. Simple-sequence repeat markers of Cattleya coccinea (Orchidaceae), an endangered species of the Brazilian Atlantic Forest. Genetics and Molecular Research 12: 3274-3278.
Moraes AP, Chinaglia M, Palma‐Silva C, & Pinheiro F. 2013. Interploidy hybridization in sympatric zones: the formation of Epidendrum fulgens× E. puniceoluteum hybrids (Epidendroideae, Orchidaceae). Ecology and evolution 3: 3824-3837.
Assis FNM, Souza BCQ, Medeiros-Neto E, Pinheiro F, Silva AEB, Félix LP. 2013. Kariology of the genus Epidendrum (Orchidaceae: Laeliinae) with emphasis on subgenus Amphyglottium and chromosome number variability in Epidendrum secundum. Botanical Journal of the Linnean Society 172:329-344
Turchetto-Zolet AC, Pinheiro F, Salgueiro F, Palma-Silva C (2013) Phylogeographical patterns shed light on evolutionary process in South America. Molecular Ecology, 22, 1193-1213.
Pessoa EM, Alves M, Alves-Araújo A, Palma-Silva C, Pinheiro F (2012) Integrating different tools to disentangle species complexes: A case study in Epidendrum (Orchidaceae). Taxon 61: 721-734.
Rivadavia F, de Miranda VFO, Hoogenstrijd G, Pinheiro F, Heubl G & Fleischmann A (2012) Is Drosera meristocaulis a pygmy sundew? Evidence of a long-distance dispersal between Western Australia and northern South America. Annals of botany 110: 11-21.
Pinheiro F, Barros F, Palma-Silva C, Fay MF, Lexer C, Cozzolino S (2011) Phylogeography and genetic differentiation along the distributional range of the orchid Epidendrum fulgens: a Neotropical coastal species not restricted to glacial refugia. Journal of Biogeography 38: 1923-1935.
Pinheiro F, Barros F, Palma-Silva C, Meyer D, Fay MF, Suzuki RM, Lexer C & Cozzolino S (2010) Hybridization and introgression across different ploidy levels in the Neotropical orchids Epidendrum fulgens and E. puniceoluteum (Orchidaceae). Molecular Ecology 19: 3981-3994.
Pinheiro F, Palma-Silva C, Barros F & Cozzolino S (2009) Cross-amplification and characterization of microsatellite loci for the Neotropical orchid genus Epidendrum. Genetics and molecular biology 32: 337-339.
Pinheiro F, Palma-Silva C, de Barros F, Félix LP, Lexer C, Cozzolino S & Fay MF (2009) Chloroplast microsatellite markers for the Neotropical orchid genus Epidendrum, and cross-amplification in other Laeliinae species (Orchidaceae). Conservation Genetics Resources 1: 505-511.
Pinheiro F, Santos MO, Barros F, Meyer D, Salatino A, Souza AP & Cozzolino S (2008) Isolation and characterization of microsatellite loci in the Brazilian orchid Epidendrum fulgens. Conservation genetics 9: 1661-1663.
Pinheiro F, Santos MO, Palma-Silva C, Barros F, Meyer D, Salatino A & Cozzolino S (2008) Isolation and characterization of microsatellite loci in Epidendrum puniceoluteum, an endemic orchid from the Atlantic Rainforest. Molecular ecology resources 8: 1114-1116.
Ledru MP, Salatino MLF, Ceccantini G, Salatino A, Pinheiro F & Pintaud JC (2007) Regional assessment of the impact of climatic change on the distribution of a tropical conifer in the lowlands of South America. Diversity and Distributions 13: 761-771.
Pinheiro F & Barros F (2007) Epidendrum secundum Jacq. e E. denticulatum Barb. Rodr.(Orchidaceae): caracteres úteis para a sua delimitação. Hoehnea 34: 563-570.
